CDS

Accession Number TCMCG051C08553
gbkey CDS
Protein Id XP_024451457.1
Location complement(join(15351125..15351198,15351639..15352723,15352817..15353019,15353383..15353670))
Gene LOC7481418
GeneID 7481418
Organism Populus trichocarpa

Protein

Length 549aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024595689.1
Definition probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X3 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category A
Description Pre-mRNA-splicing factor ATP-dependent RNA
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12820        [VIEW IN KEGG]
EC 3.6.4.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003724        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004004        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008186        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009526        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009941        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGTACGGAGAGGAAGAGGAAGGTGAGTTTATTCGACGTGGTTGACGAGACGTCGCTTTCTGCAAAGATCGTGAAATCGAACGGGGCGATGGGTAACAATAACAATGGAGGAAGTAGTTTGATAAATCGGTGGAATGGGAAGCCCTACTCACAGAGGTACTATGATATATTAGAGAAGAGGAAGAATTTGCCTGTTTGGCATCAAAAAGAGGATTTCTTACAAGTTTTGAAGAAAAATCAGGCTATCATCCTTGTTGGCGAGACTGGTAGTGGTAAAACCACTCAGATTCCTCAGTTTGTTTTGGAAGCTGTAGACTTAGAATCTCCGGATAAACGTAGGAAGATGATGATTGCATGTACCCAACCTCGAAGGGTGGCGGCAATGTCTGTTTCTCGACGTGTTGCTGAGGAGATGGATGTTACAATTGGCGAAGAGGTTGGTTATAGCATCCGTTTTGAAGACTGTAGCAGTGCGAAAACGGTTTTGAAGTATCTTACTGATGGTATGCTTTTAAGAGAAGCAATGACCGATCCACTTTTGGAACGGTACAAAGTAATAATTCTTGATGAGGCCCACGAAAGAACTCTATCAACAGATGTGCTATTCGGGCTTCTTAAAGAAGTGCTGAAAAATAGGCCTGACCTGAAGCTAGTTGTAATGAGTGCAACACTTGAGGCTGAGAAATTTCAGGGTTATTTTGGTGAAGCACCGCTTATGAAAGTTCCTGGCAGGCTTCATCCGGTTGAAATTTTCTATACCCAGGACCCTGAGAGGGATTACCTCGAGGCAGCAATTCGAACAGTTGTCCAGATACACTTGTGTGAACCCCTTGGAGATATACTTGTTTTCCTAACTGGGGAGGAGGAGATAGAAGATGCTTGCCGAAAAATAACAAAAGAAATTGGAAATTTGGGGGACCAAGTGGGGCCAGTGAAAGTGGTGCCTCTATATTCTACGCTTCCACCAGCCATGCAGCAAAAAATATTCGAACCTGCTCCACCTCCACTGCAGGAGGGTGGCCCTTCTGGAAGGAAGATTGTGGTGTCAACAAACATTGCAGAAACTTCTTTGACTATAGATGGTATTGTTTATGTTATCGACCCTGGCTTCTCAAAACAAAAGGTTTATAACCCACGAGTGCGGGTTGAATCTTTGTTAGTTTCCCCCATATCAAAGGCTAGTGCCCACCAGAGATCAGGACGTGCTGGAAGAACTCAACCAGGCAAATGTTTTAGACTCTACACAGAGAAAAGTTTCAACCAGGATCTTCAGCCTCAGACCTATCCAGAGATATTGCGGTCAAACCTTGCAAATACAGTTCTAACGTTGAAGAAATTGGGTATTGATGATCTGGTGCACTTTGATTTCATGGATCCTCCTGCCCCTGAGACATTGATGCGAGCATTGGAGGTGTTGAATTATTTGGGAGCATTGGATGATGAGGGGAATTTGACAAAGCTTGGGGAGATCATGAGTGAATTTCCCTTGGATCCTCAGCTGTCAAAGATGCTTGTTGTGAGTCCAGAATTCAACTGTTCGAATGAAATTCTTTCAATTTCAGCCATGCTTTCAGGGAGGCGCAAAAGGCTGCTGATGAAGCAAAAGCAAGGTTTGGGCACATTGATGGGGATCACCTCACGCTGTTGA
Protein:  
MGTERKRKVSLFDVVDETSLSAKIVKSNGAMGNNNNGGSSLINRWNGKPYSQRYYDILEKRKNLPVWHQKEDFLQVLKKNQAIILVGETGSGKTTQIPQFVLEAVDLESPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLSTDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFGEAPLMKVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHLCEPLGDILVFLTGEEEIEDACRKITKEIGNLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLQEGGPSGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNQDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEIMSEFPLDPQLSKMLVVSPEFNCSNEILSISAMLSGRRKRLLMKQKQGLGTLMGITSRC